Quickstart

cookiecutter-scverse-instance works on AnnData objects: cookiecutter_scverse_instance.pp preprocesses them, cookiecutter_scverse_instance.tl computes on them and cookiecutter_scverse_instance.pl plots them.

import numpy as np
from anndata import AnnData

import cookiecutter_scverse_instance

adata = AnnData(np.random.normal(size=(20, 10)))

cookiecutter_scverse_instance.pp.basic_preproc(adata)
cookiecutter_scverse_instance.tl.basic_tool(adata)
cookiecutter_scverse_instance.pl.basic_plot(adata)

The tutorials go into more detail and the API reference lists every function.